<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \bartext{16th EMS Annual Meeting \& 11th European Conference on Applied
Climatology (ECAC)}?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">ASR</journal-id>
<journal-title-group>
<journal-title>Advances in Science and Research</journal-title>
<abbrev-journal-title abbrev-type="publisher">ASR</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Adv. Sci. Res.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1992-0636</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/asr-14-181-2017</article-id><title-group><article-title>Validation of gas phase chemistry in the WRF-Chem model over Europe</article-title>
      </title-group><?xmltex \runningtitle{Validation of WRF-Chem model}?><?xmltex \runningauthor{J.~Karlick\'{y} et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Karlický</surname><given-names>Jan</given-names></name>
          <email>jan.karlicky@mff.cuni.cz</email>
        <ext-link>https://orcid.org/0000-0002-2936-0785</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Huszár</surname><given-names>Peter</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-2954-8347</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Halenka</surname><given-names>Tomáš</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1584-791X</ext-link></contrib>
        <aff id="aff1"><institution>Department of Atmospheric Physics, Faculty of Mathematics and Physics, Charles University,
Prague, V Holešovičkách 2, 180 00 Prague 8, Czech Republic</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Jan Karlický (jan.karlicky@mff.cuni.cz)</corresp></author-notes><pub-date><day>21</day><month>June</month><year>2017</year></pub-date>
      
      <volume>14</volume>
      <fpage>181</fpage><lpage>186</lpage>
      <history>
        <date date-type="received"><day>14</day><month>January</month><year>2017</year></date>
           <date date-type="rev-recd"><day>24</day><month>May</month><year>2017</year></date>
           <date date-type="accepted"><day>26</day><month>May</month><year>2017</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/3.0/">https://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://asr.copernicus.org/articles/14/181/2017/asr-14-181-2017.html">This article is available from https://asr.copernicus.org/articles/14/181/2017/asr-14-181-2017.html</self-uri>
<self-uri xlink:href="https://asr.copernicus.org/articles/14/181/2017/asr-14-181-2017.pdf">The full text article is available as a PDF file from https://asr.copernicus.org/articles/14/181/2017/asr-14-181-2017.pdf</self-uri>


      <abstract>
    <p>This work presents the evaluation of the WRF-Chem model applied for a
European domain over the year 2008 and employing two different chemical
modules. Airbase European station data and E-OBS database are used for
validation of the simulated meteorological conditions as well as
concentrations of NO<inline-formula><mml:math id="M1" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, SO<inline-formula><mml:math id="M2" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and ozone. In both experiments,
underestimation of the amplitude of temperature daily cycle (by about
1 <inline-formula><mml:math id="M3" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) and precipitation overestimation (by about 25 %) were found,
with possible impact on chemistry processes due to increased removal via wet
deposition. The modelled ozone concentrations match the observations quite
well, while the simulated concentrations of other gases show highly negative
bias.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>During the last decades, great progress has been achieved in numerical
atmospheric modelling, especially in coupling numerical weather prediction
(NWP) models with chemical transport models (CTM). A simple way of coupling
NWP models and CTM, the so called off-line approach involving the chemical
part of the model driven by an independent NWP model <xref ref-type="bibr" rid="bib1.bibx8" id="paren.1"/> has
some computational advantages, but neglects the impact of chemistry on
meteorological conditions (e.g. via radiation effects). Currently, due to the
growth of the available computational capacity, fully on-line approach
prevails – see e.g. <xref ref-type="bibr" rid="bib1.bibx6" id="normal.2"/> for the overview of its advantages.
However, even with the fully on-line approach, lots of model inaccuracies
still occur in resulting values of gas and aerosol concentrations in
validation studies <xref ref-type="bibr" rid="bib1.bibx12 bib1.bibx22 bib1.bibx13" id="paren.3"><named-content content-type="pre">e.g.</named-content></xref>. These
inaccuracies are caused by simplification used in model design as well as by
unreliable model inputs, mainly regarding the emission sources.</p>
      <p>The aim of this study is evaluation of the ability of the atmospheric model
WRF-Chem to capture the temporal and spatial distribution of short-lived gas
concentrations, together with comparison of two chemical modules used within
WRF-Chem. Due to the fact that the emission sources strongly impact model
results, our analysis can also be taken as partial evaluation of emission
sources accuracy.</p>
</sec>
<sec id="Ch1.S2">
  <title>Experimental setup and data</title>
      <p>For all simulations, Weather Research and Forecasting/Chemistry model
<xref ref-type="bibr" rid="bib1.bibx8" id="normal.4"><named-content content-type="pre">WRF-Chem;</named-content></xref>, version 3.5.1 is used. WRF-Chem is a mesoscale
non-hydrostatic meteorological model with on-line coupled chemistry. In our
experiments, a computational domain with <inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:mn mathvariant="normal">190</mml:mn><mml:mo>×</mml:mo><mml:mn mathvariant="normal">206</mml:mn></mml:mrow></mml:math></inline-formula> grid points (25 km
horizontal resolution) and 30 vertical levels up to 50 hPa is employed,
centered on central Europe (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). For long-wave and
short-wave radiation transfer, RRTM <xref ref-type="bibr" rid="bib1.bibx19" id="paren.5"/> and Goddard <xref ref-type="bibr" rid="bib1.bibx3" id="paren.6"/>
schemes are activated, respectively. Microphysical processes are resolved by
the Morrison double-moment scheme <xref ref-type="bibr" rid="bib1.bibx20" id="paren.7"/>. Further, the Noah Land
Surface Model <xref ref-type="bibr" rid="bib1.bibx2" id="paren.8"/> for surface layer processes, Yonsei
University scheme <xref ref-type="bibr" rid="bib1.bibx11" id="normal.9"><named-content content-type="pre">YSU PBL;</named-content></xref> for planetary boundary layer
description and Grell-Freitas <xref ref-type="bibr" rid="bib1.bibx7" id="paren.10"/> scheme for convection are
used.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p>Position of the model domain in regular longitude-latitude grid.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://asr.copernicus.org/articles/14/181/2017/asr-14-181-2017-f01.png"/>

      </fig>

      <p>As meteorological boundary conditions, the ERA-interim <xref ref-type="bibr" rid="bib1.bibx4" id="paren.11"/> dataset
is used. For the chemical part, lateral boundary conditions are computed from
MOZART-4 reanalysis driven fields <xref ref-type="bibr" rid="bib1.bibx5" id="paren.12"/>. Finally, upper boundary
conditions are determined from climatology.</p>
      <p>Anthropogenic emissions are taken from the TNO MACC-II database. Biogenic
emissions are on-line computed by the MEGAN model <xref ref-type="bibr" rid="bib1.bibx9" id="paren.13"/>. Emissions
from biomass burning are compiled from the Fire Inventory from NCAR
<xref ref-type="bibr" rid="bib1.bibx24" id="normal.14"><named-content content-type="pre">FINN;</named-content></xref>.</p>
      <p>In the presented study, two mechanisms of gas-phase chemistry are used,
namely Carbon Bond Mechanism, version Z <xref ref-type="bibr" rid="bib1.bibx25" id="normal.15"><named-content content-type="pre">CBMZ;</named-content></xref> and Regional
Acid Deposition Model, v. 2 <xref ref-type="bibr" rid="bib1.bibx21" id="normal.16"><named-content content-type="pre">RADM2;</named-content></xref>. Both chemical
mechanisms are tested with the above mentioned setup on one-year long
simulations with 5-days spin-up. The simulations are run freely without any
restarts or nudging procedure. The wet scavenging of main water soluble gases
is included only in convective updrafts on the sub-grid scale, coupled with a
simple sub-grid scheme of the aqueous chemistry. Aerosol chemistry is not
included in these simulations.</p>
      <p>For validation of the physical part of the WRF-Chem model, the E-OBS (v. 11)
dataset <xref ref-type="bibr" rid="bib1.bibx10" id="paren.17"/> is used. E-OBS offers a
<inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">0.25</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">0.25</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> resolution gridded data of temperature and
precipitation fields. Model biases are determined in terms of temperature
means, maxima, minima and precipitation sums.</p>
      <p>The concentrations of the pollutants of interest, O<inline-formula><mml:math id="M6" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, NO<inline-formula><mml:math id="M7" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and SO<inline-formula><mml:math id="M8" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, are evaluated against the Airbase database (v. 7), which includes
European station-based concentration measurements. For validation, background
stations were taken into account, however, specific types of stations (rural,
suburban, urban) are distinguished within the validation to investigate the
accuracy of model predictions under different chemical regimes given by the
type of the station.</p>
      <p>The ability of WRF-Chem atmospheric model to capture the total
amount and temporal and spatial distribution of the pollutants is evaluated
in terms of the following quantities: bias – averaged model relative
deviation from reference data, correlation coefficient – correlation between
model and reference time series, slope – regression coefficient of model
values on the reference values.</p>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
      <p>In terms of domain and seasonal averages, temperature biases are below
1 <inline-formula><mml:math id="M9" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C (Fig. <xref ref-type="fig" rid="Ch1.F2"/>). Temperature maxima are shifted to
lower values in comparison to temperature mean and minima, which consequently
leads to reduced amplitude of the daily cycle. Precipitation is overestimated
by the model in all seasons, especially in spring. This wet bias can strongly
impact the model chemistry due to overestimated wet scavenging of
water-reactive gases during the convective season, when the convective
precipitation dominates over the large scale one.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p>Averaged seasonal modelled temperature (<inline-formula><mml:math id="M10" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C) and precipitation
(mm; CBMZ – blue, RADM2 – red). Green curve stands for the seasonal values given by E-OBS.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://asr.copernicus.org/articles/14/181/2017/asr-14-181-2017-f02.png"/>

      </fig>

      <p>To compare the simulated and station-based pollutant concentrations,
statistics introduced in Sect. <xref ref-type="sec" rid="Ch1.S2"/> were also applied to ozone, NO<inline-formula><mml:math id="M11" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>
and SO<inline-formula><mml:math id="M12" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> series, separately for individual station types
(Fig. <xref ref-type="fig" rid="Ch1.F3"/>). The total amounts of NO<inline-formula><mml:math id="M13" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and SO<inline-formula><mml:math id="M14" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> are
underestimated for all station types, though more in suburban and urban
stations. Conversely, the total ozone amount is overestimated at these
stations. The highest values of correlations are achieved for ozone (at all
station types). On the other hand, the correlations of the SO<inline-formula><mml:math id="M15" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> series are
very low. That is also true for the values of slope, with the best match
again found for the ozone series. Differences between series obtained by the
CBMZ and RADM2 schemes are low for NO<inline-formula><mml:math id="M16" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and SO<inline-formula><mml:math id="M17" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. For ozone, CBMZ
simulation is less biased with slightly higher correlations and slope.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p>Averaged biases (%), correlation coefficients (CC) and slopes of model
and station daily values for rural, suburban and urban stations. The specific
gases are indicated by colors: Ozone – blue, NO<inline-formula><mml:math id="M18" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> – green, SO<inline-formula><mml:math id="M19" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> – red;
lighter colors mean the CBMZ chemical mechanism, darker RADM2.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://asr.copernicus.org/articles/14/181/2017/asr-14-181-2017-f03.png"/>

      </fig>

      <p>Figure <xref ref-type="fig" rid="Ch1.F4"/> plots the comparison of the averaged annual cycles for
all targeted pollutants and station types. As before, the best agreement was
found for ozone, particularly at the rural stations. The variance of the
model values is, however, much smaller. For suburban and urban stations, the
monthly averaged model values are largely overestimated, especially in the
simulation using the RADM2 scheme. For NO<inline-formula><mml:math id="M20" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and SO<inline-formula><mml:math id="M21" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, the model values
are close to observations only at the rural stations. At the other types of
stations, model values are greatly underestimated, which can be seen also in
Fig. <xref ref-type="fig" rid="Ch1.F3"/> as negative total biases. In most cases, the variance is
distinctly underestimated by the model. Differences between the two model
setups are negligible.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p>Comparison of monthly gas concentrations between model values
(CBMZ – blue, RADM2 – red) and measurements (black). Error bars indicate averaged standard deviation.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://asr.copernicus.org/articles/14/181/2017/asr-14-181-2017-f04.pdf"/>

      </fig>

      <p>In Fig. <xref ref-type="fig" rid="Ch1.F5"/>, a comparison of averaged model and observed daily
cycles of ozone for winter and summer is seen. In summer, daily maxima are
captured accurately. The daily minima during early morning are overestimated,
resulting in underestimation of the daily amplitude by the model. In winter
season, too, model values have lower daily amplitude. Moreover, the
simulation with the RADM2 scheme fails to capture the double maximum in the
daily cycle.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p>Comparison of ozone averaged daily cycles between model values
(CBMZ – blue, RADM2 – red) and measurements (black). Error bars indicate averaged standard deviation over hours.</p></caption>
        <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://asr.copernicus.org/articles/14/181/2017/asr-14-181-2017-f05.pdf"/>

      </fig>

</sec>
<sec id="Ch1.S4">
  <title>Discussion</title>
      <p>Although this study is primarily focused on validation of the chemical part
of WRF-Chem, a short comparison of model and E-OBS meteorology is provided,
to ensure that the model meteorology is not too departed from observations to
have a significant impact to chemistry. Results showed that differences
between simulation with CBMZ and RADM2 chemical modules are, in terms of
meteorology, negligible, because no impact of gas-phase chemistry on
meteorology via radiation is considered. The only source of these differences
are the slightly modified geographic static input data. Different versions of
standard WRF static input were adopted in simulations, which resulted in
slightly modified values of land-use type, fraction of vegetation and other
surface parameters in a very few grid-points across the domain. These
differences were enhanced during the model integration by the non-linear
higher order effects, giving a first guess of the internal model variability.
The findings of <xref ref-type="bibr" rid="bib1.bibx17" id="normal.18"/> were similar – they have shown that the
differences between two simulations without aerosol-radiative effects are
small, but not zero. The lower daily amplitude of temperature is probably
caused by overpredicted cloudiness in the model <xref ref-type="bibr" rid="bib1.bibx13" id="normal.19"><named-content content-type="pre">also seen
in</named-content></xref>, which can further cause lower daily amplitude of ozone
concentrations. Higher convective precipitation, as was mentioned before,
lowers concentration of water-reactive gases due to wet scavenging, so it can
be one of the possible reasons for negative biases of SO<inline-formula><mml:math id="M22" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, and partly of
NO<inline-formula><mml:math id="M23" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, in the convective season.</p>
      <p>In agreement with the results of <xref ref-type="bibr" rid="bib1.bibx12" id="text.20"/>, <xref ref-type="bibr" rid="bib1.bibx22" id="normal.21"/> or
<xref ref-type="bibr" rid="bib1.bibx13" id="normal.22"/>, the correlation values are substantially higher for ozone
than for other species (Fig. <xref ref-type="fig" rid="Ch1.F3"/>). Values of correlation
coefficients, too, are comparable to the mentioned works. A possible reason
is that ozone is a secondary pollutant, with spatial distribution less
variable near the emission sources than SO<inline-formula><mml:math id="M24" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> (or, partly NO<inline-formula><mml:math id="M25" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>), so it
could be captured by model with 25 km resolution much better than primary
pollutants. Another reason is that chemical schemes are designed and tuned to
achieve correct ozone concentrations, while larger model biases persist for
primary pollutants <xref ref-type="bibr" rid="bib1.bibx16 bib1.bibx12" id="paren.23"/>. The overall bias of SO<inline-formula><mml:math id="M26" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>,
which is negative for all stations, is not in agreement with the above
mentioned studies. However, it can be attributed to the already mentioned
overestimation of convective precipitation and to the better vertical
distribution of emissions, which is especially important for <inline-formula><mml:math id="M27" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">SO</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> that
is often emitted from tall stacks <xref ref-type="bibr" rid="bib1.bibx12" id="paren.24"/>. Another reason can lie in
the used parameterization of planetary boundary layer <xref ref-type="bibr" rid="bib1.bibx11" id="normal.25"><named-content content-type="pre">YSU
PBL;</named-content></xref>, which was found to over-predict PBL height, resulting in
stronger vertical transport (e.g. <xref ref-type="bibr" rid="bib1.bibx18" id="altparen.26"/> showed that this scheme,
in general, poorly represents nocturnal PBL).</p>
      <p>Annual cycles (Fig. <xref ref-type="fig" rid="Ch1.F4"/>) at rural stations are captured with similar
accuracy as in <xref ref-type="bibr" rid="bib1.bibx12" id="normal.27"/> or <xref ref-type="bibr" rid="bib1.bibx13" id="normal.28"/>, with a little improvement
for ozone, but with model annual cycle of SO<inline-formula><mml:math id="M28" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> shifted to lower values. In
general, simulations with either chemical mechanism overestimate ozone,
especially for suburban and urban stations and in the nighttime
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>). This somewhat contrasts with the conclusion by
<xref ref-type="bibr" rid="bib1.bibx14" id="normal.29"/>, who compared model results against rural background stations
and found negative biases in ozone concentrations during daytime.
Overestimation of ozone at non-rural stations can be explained by coarse
model resolution and the related reduced NO–titration <xref ref-type="bibr" rid="bib1.bibx14" id="paren.30"/>.
Faster dilution of NO<inline-formula><mml:math id="M29" display="inline"><mml:msub><mml:mi/><mml:mi>x</mml:mi></mml:msub></mml:math></inline-formula> leads to more effective ozone production
<xref ref-type="bibr" rid="bib1.bibx23" id="paren.31"/>. The lower daily amplitude of summer ozone daily cycle
(Fig. <xref ref-type="fig" rid="Ch1.F5"/>) is nearly the same as the amplitude described by
<xref ref-type="bibr" rid="bib1.bibx12" id="normal.32"/> and <xref ref-type="bibr" rid="bib1.bibx13" id="normal.33"/>, with the missing early-morning decrease,
too. In winter, there is a difference between specific chemical mechanisms;
simulation with CBMZ scheme produces a double daily cycle, similarly to
<xref ref-type="bibr" rid="bib1.bibx12" id="normal.34"/>, who invoked the CB-IV chemical mechanism. The simulation with
the RADM2 scheme produces only a simple one-mode daily cycle.</p>
      <p>The comparison of the two mechanisms further reveals that CBMZ usually
provides lower ozone and higher NO<inline-formula><mml:math id="M30" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> concentrations than RADM2. This can be
connected to more effective NO–titration in CBMZ as identified by
<xref ref-type="bibr" rid="bib1.bibx1" id="normal.35"/>, who made similar simulations over Europe.
<xref ref-type="bibr" rid="bib1.bibx15" id="normal.36"/> concluded that the uncertainty in predicted O<inline-formula><mml:math id="M31" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> in a 3-D
model solely due to the choice of gas-phase chemical mechanism should be of
the order of 5 %, or 4 ppbv. For JJA, our differences lie within this
range; however, winter differences are somewhat larger.</p>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Summary and conclusions</title>
      <p>Evaluation of the WRF-Chem model using station data was performed in order to
investigate the model's ability to capture surface values of meteorological
and gas concentration fields. The amplitude of temperature daily cycle is
underestimated by about 1 <inline-formula><mml:math id="M32" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. The total precipitation is
overestimated in every season (approximately by 25 %). Daily and annual
cycles of ozone concentration are well captured, while the correlation of
daily values with observations is nearly 0.7. Correlation of NO<inline-formula><mml:math id="M33" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and
SO<inline-formula><mml:math id="M34" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> daily values is lower, and the overall bias at rural stations reaches
almost <inline-formula><mml:math id="M35" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>40 % for NO<inline-formula><mml:math id="M36" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and <inline-formula><mml:math id="M37" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>30 % for SO<inline-formula><mml:math id="M38" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>. At suburban and urban
stations, the underestimation is much larger.</p>
      <p>The differences between CBMZ and RADM2 chemical mechanisms are significant in
term of the ozone daily cycle, especially in winter. Here, CBMZ reproduces
the daily cycle more accurately. Also in overall statistics (bias,
correlation and slope), CBMZ achieves a better match.</p>
      <p>This work focused on evaluation of only three gases. For better understanding
of the model performance and emission accuracy, model evaluation should be
extended to other gases considered by the model for which measurements are
available for validation. An even better strategy would be to compare not
only surface concentrations, but also to use vertical measurements of the
examined gases. As future work, a multi-model and multi-mechanism evaluation
including satellite column observations is planned in order to achieve as
accurate model description of the real state as possible.</p>
</sec>

      
      </body>
    <back><notes notes-type="codedataavailability">

      <p>The source code of the WRF-Chem model is publicly available
(after registration) on <uri>http://www2.mmm.ucar.edu/wrf/users/download/get_source.html</uri>.
The modeled data used in this study can be provided upon request to the corresponding author.</p>
  </notes><notes notes-type="competinginterests">

      <p>The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p>This work is supported by the Charles University, projects GA UK
No. 115-10/227184 and SVV No. 260327. Authors wish to express their thanks to
WRF team community for their development of the model WRF and chemistry
modules used in the study. Further, our thanks go to the ECAD team for the
E-OBS gridded data and European Environment Agency for AirBase data used for
validation and analysis of results. Authors also would like to acknowledge
the MACC organization for TNO emission data and the NCAR for MOZART-4/GEOS-5
and Biomass Burning emission data, which are all used in our model
simulations.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited by:
Martin Piringer<?xmltex \hack{\newline}?> Reviewed by: two anonymous referees</p></ack><ref-list>
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    <!--<article-title-html>Validation of gas phase chemistry in the WRF-Chem model over Europe</article-title-html>
<abstract-html><p class="p">This work presents the evaluation of the WRF-Chem model applied for a
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modules. Airbase European station data and E-OBS database are used for
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